{
  "_id": "6a142210acfb0bcc41d3ea88",
  "Package": "usdm",
  "Type": "Package",
  "Title": "Uncertainty Analysis for Species Distribution Models",
  "Version": "2.1-7",
  "Date": "2023-09-29",
  "Author": "Babak Naimi",
  "Maintainer": "Babak Naimi <naimi.b@gmail.com>",
  "Description": "This is a framework that aims to provide methods and tools\nfor assessing the impact of different sources of uncertainties\n(e.g.positional uncertainty) on performance of species\ndistribution models (SDMs).)",
  "License": "GPL (>= 3)",
  "URL": "https://r-gis.net/",
  "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://babaknaimi.r-universe.dev",
  "Date/Publication": "2023-09-29 01:15:57 UTC",
  "RemoteUrl": "https://github.com/babaknaimi/usdm",
  "RemoteRef": "HEAD",
  "RemoteSha": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-25 10:14:00 UTC",
    "User": "root"
  },
  "MD5sum": "a18e0090b3474d674f8ae26c992ad677",
  "_user": "babaknaimi",
  "_type": "src",
  "_file": "usdm_2.1-7.tar.gz",
  "_fileid": "c8d43ef61dae0e19fef35420c59e452ef496c20a781e34dd1c2f1b356fe89e24",
  "_filesize": 531813,
  "_sha256": "c8d43ef61dae0e19fef35420c59e452ef496c20a781e34dd1c2f1b356fe89e24",
  "_created": "2026-05-25T10:14:00.000Z",
  "_published": "2026-05-25T10:18:56.463Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77694530358,
      "time": 233,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7196257351"
    },
    {
      "job": 77694530367,
      "time": 213,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196252615"
    },
    {
      "job": 77694530350,
      "time": 129,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7196232425"
    },
    {
      "job": 77694530382,
      "time": 146,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196236412"
    },
    {
      "job": 77694133004,
      "time": 193,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196199236"
    },
    {
      "job": 77694530347,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196226428"
    },
    {
      "job": 77694530417,
      "time": 173,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7196243350"
    },
    {
      "job": 77694530390,
      "time": 176,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7196243720"
    },
    {
      "job": 77694530365,
      "time": 190,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7196247684"
    }
  ],
  "_buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/babaknaimi/usdm",
  "_commit": {
    "id": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
    "author": "babaknaimi <naimi.b@mail.com>",
    "committer": "babaknaimi <naimi.b@mail.com>",
    "message": "bug fix\n",
    "time": 1695950157
  },
  "_maintainer": {
    "name": "Babak Naimi",
    "email": "naimi.b@gmail.com",
    "login": "babaknaimi",
    "linkedin": "in/babak-naimi-73026341",
    "description": "I am a senior researcher at the University of Utrecht, NL. I am interested in spatial and spatiotemporal modelling, AI, and spatial data science.",
    "uuid": 6040726
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "terra",
      "role": "Depends"
    },
    {
      "package": "raster",
      "role": "Imports"
    }
  ],
  "_owner": "babaknaimi",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "babaknaimi",
      "count": 1,
      "uuid": 6040726
    }
  ],
  "_userbio": {
    "uuid": 6040726,
    "type": "user",
    "name": "Babak Naimi",
    "description": "I am a senior researcher at the University of Utrecht, NL. I am interested in spatial and spatiotemporal modelling, AI, and spatial data science."
  },
  "_downloads": {
    "count": 7124,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/usdm"
  },
  "_mentions": 85,
  "_devurl": "https://github.com/babaknaimi/usdm",
  "_searchresults": 886,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/usdm.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/babaknaimi/usdm",
  "_realowner": "babaknaimi",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.1-7",
      "date": "2012-11-15"
    },
    {
      "version": "1.1-8",
      "date": "2013-03-20"
    },
    {
      "version": "1.1-12",
      "date": "2013-07-23"
    },
    {
      "version": "1.1-15",
      "date": "2015-08-01"
    },
    {
      "version": "1.1-18",
      "date": "2017-06-25"
    },
    {
      "version": "2.1-6",
      "date": "2023-07-07"
    },
    {
      "version": "2.1-7",
      "date": "2023-09-29"
    }
  ],
  "_exports": [
    "exclude",
    "lisa",
    "speciesLisa",
    "Variogram",
    "vif",
    "vifcor",
    "vifstep"
  ],
  "_help": [
    {
      "page": "usdm-package",
      "title": "Uncertainty analysis for SDMs",
      "topics": [
        "usdm-package",
        "usdm"
      ]
    },
    {
      "page": "exclude",
      "title": "Excluding variables specified in a VIF object",
      "topics": [
        "exclude",
        "exclude,data.frame,missing-method",
        "exclude,data.frame,VIF-method",
        "exclude,matrix,missing-method",
        "exclude,matrix,VIF-method",
        "exclude,RasterBrick,missing-method",
        "exclude,RasterBrick,VIF-method",
        "exclude,RasterStack,missing-method",
        "exclude,RasterStack,VIF-method",
        "exclude,SpatRaster,missing-method",
        "exclude,SpatRaster,VIF-method"
      ]
    },
    {
      "page": "lisa",
      "title": "Local indicators of spatial association",
      "topics": [
        "lisa",
        "lisa,Raster,missing-method",
        "lisa,Raster,SpatialPoints-method",
        "lisa,Raster,SpatialPointsDataFrame-method",
        "lisa,SpatRaster,missing-method",
        "lisa,SpatRaster,SpatVector-method"
      ]
    },
    {
      "page": "plot.RasterVariogram",
      "title": "Plot variogram or variogram cloud or boxplot based on variogram cloud",
      "topics": [
        "plot,RasterVariogram-method",
        "plot.RasterVariogram"
      ]
    },
    {
      "page": "plot.speciesLisa",
      "title": "Plot positional uncertainty based on LISA",
      "topics": [
        "plot,speciesLISA,missing-method",
        "plot,speciesLISA,SpatialPolygons-method",
        "plot,speciesLISA,SpatialPolygonsDataFrame-method",
        "plot,speciesLISA,SpatVector-method",
        "plot.speciesLISA"
      ]
    },
    {
      "page": "RasterVariogram-class",
      "title": "RasterVariogram class",
      "topics": [
        "RasterVariogram-class",
        "show,RasterVariogram-method"
      ]
    },
    {
      "page": "speciesLisa",
      "title": "LISA in predictors at species occurrence locations",
      "topics": [
        "speciesLisa",
        "speciesLisa,Raster,SpatialPoints-method",
        "speciesLisa,Raster,SpatialPointsDataFrame-method",
        "speciesLisa,SpatRaster,SpatVector-method"
      ]
    },
    {
      "page": "speciesLISA-class",
      "title": "speciesLISA class",
      "topics": [
        "print,speciesLISA-method",
        "speciesLISA-class",
        "spoint-class"
      ]
    },
    {
      "page": "Variogram",
      "title": "Empirical variogram for raster data",
      "topics": [
        "Variogram",
        "Variogram,RasterLayer-method",
        "Variogram,SpatRaster-method"
      ]
    },
    {
      "page": "vif",
      "title": "Variance Inflation Factor and test for multicollinearity",
      "topics": [
        "vif",
        "vif,data.frame-method",
        "vif,matrix-method",
        "vif,RasterStackBrick-method",
        "vif,SpatRaster-method",
        "vifcor",
        "vifcor,data.frame-method",
        "vifcor,matrix-method",
        "vifcor,RasterStackBrick-method",
        "vifcor,SpatRaster-method",
        "vifstep",
        "vifstep,data.frame-method",
        "vifstep,matrix-method",
        "vifstep,RasterStackBrick-method",
        "vifstep,SpatRaster-method"
      ]
    },
    {
      "page": "VIF-class",
      "title": "VIF class",
      "topics": [
        "show,VIF-method",
        "VIF-class"
      ]
    }
  ],
  "_readme": "https://github.com/babaknaimi/usdm/raw/HEAD/README.md",
  "_rundeps": [
    "lattice",
    "raster",
    "Rcpp",
    "sp",
    "terra"
  ],
  "_score": 7.578308883061901,
  "_indexed": true,
  "_nocasepkg": "usdm",
  "_universes": [
    "babaknaimi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1-7",
      "date": "2026-05-25T10:16:33.000Z",
      "distro": "noble",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "3cd6917b38c20c8fd1ac6c6453d7139edb7c73b886deec37d81cebbcc45a34cc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.1-7",
      "date": "2026-05-25T10:16:33.000Z",
      "distro": "noble",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "0222adb89f0c8e116fb593b3228d6b18894739832cc85225b5f3035ffa62697d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1-7",
      "date": "2026-05-25T10:15:57.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "21d4b4ecc06783c9a10f152afc32675fd9193d7e5341795d4b81aa68a054e1ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.1-7",
      "date": "2026-05-25T10:16:04.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "cfc86d1b6f96cff705130e9d2d937e9cddbc3b9656130313a13b5cdf3b082457",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1-7",
      "date": "2026-05-25T10:16:29.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "20754745ca9350a2739792d4c1952eaf9103c43bd546b05702274d9b75b3a353",
      "status": "success",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1-7",
      "date": "2026-05-25T10:15:35.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "e9ee2d94106441236267c5af29126e8474995898fdf9a3fad8426095f0ce97da",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1-7",
      "date": "2026-05-25T10:15:35.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "38263916650d4399c0df84f091e84c6d80b15b34d942bff4fa88d42b4dc15e68",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.1-7",
      "date": "2026-05-25T10:15:51.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "4899c2ece06ecbc98b5094ad6b65421a95d510e54706160c7ddd810a533c70a3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/26395186988"
    }
  ]
}