{
  "_id": "6a48ddd5b5e98c4082a00c76",
  "Package": "usdm",
  "Type": "Package",
  "Title": "Uncertainty Analysis for Species Distribution Models",
  "Version": "2.1-7",
  "Date": "2023-09-29",
  "Author": "Babak Naimi",
  "Maintainer": "Babak Naimi <naimi.b@gmail.com>",
  "Description": "This is a framework that aims to provide methods and tools\nfor assessing the impact of different sources of uncertainties\n(e.g.positional uncertainty) on performance of species\ndistribution models (SDMs).)",
  "License": "GPL (>= 3)",
  "URL": "https://r-gis.net/",
  "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://babaknaimi.r-universe.dev",
  "Date/Publication": "2023-09-29 01:15:57 UTC",
  "RemoteUrl": "https://github.com/babaknaimi/usdm",
  "RemoteRef": "HEAD",
  "RemoteSha": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 09:43:00 UTC",
    "User": "root"
  },
  "_user": "babaknaimi",
  "_type": "src",
  "_file": "usdm_2.1-7.tar.gz",
  "_fileid": "https://r2.ropensci.org/b354d8c06e1e35a2edddef46de639e1e1ce09686357ef270061d57c6e26725dd",
  "_filesize": 533849,
  "_sha256": "b354d8c06e1e35a2edddef46de639e1e1ce09686357ef270061d57c6e26725dd",
  "_expires": "2026-10-12T10:17:55.000Z",
  "_created": "2026-07-04T09:43:00.000Z",
  "_published": "2026-07-04T10:17:57.247Z",
  "_jobs": [
    {
      "job": 85122219174,
      "time": 238,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8080589231"
    },
    {
      "job": 85122219180,
      "time": 195,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080584064"
    },
    {
      "job": 85122219175,
      "time": 132,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8080792141"
    },
    {
      "job": 85122219169,
      "time": 136,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080788305"
    },
    {
      "job": 85122008625,
      "time": 205,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080559661"
    },
    {
      "job": 85122219166,
      "time": 143,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8080577267"
    },
    {
      "job": 85122219209,
      "time": 191,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8080583476"
    },
    {
      "job": 85122219207,
      "time": 178,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8080581970"
    },
    {
      "job": 85122219177,
      "time": 185,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8080583677"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193",
  "_status": "success",
  "_upstream": "https://github.com/babaknaimi/usdm",
  "_commit": {
    "id": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
    "author": "babaknaimi <naimi.b@mail.com>",
    "committer": "babaknaimi <naimi.b@mail.com>",
    "message": "bug fix\n",
    "time": 1695950157
  },
  "_maintainer": {
    "name": "Babak Naimi",
    "email": "naimi.b@gmail.com",
    "login": "babaknaimi",
    "linkedin": "in/babak-naimi-73026341",
    "description": "I am a senior researcher at the University of Utrecht, NL. I am interested in spatial and spatiotemporal modelling, AI, and spatial data science.",
    "uuid": 6040726
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "terra",
      "role": "Depends"
    },
    {
      "package": "raster",
      "role": "Imports"
    }
  ],
  "_owner": "babaknaimi",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "babaknaimi",
      "count": 1,
      "uuid": 6040726
    }
  ],
  "_userbio": {
    "uuid": 6040726,
    "type": "user",
    "name": "Babak Naimi",
    "followers": 104,
    "description": "I am a senior researcher at the University of Utrecht, NL. I am interested in spatial and spatiotemporal modelling, AI, and spatial data science."
  },
  "_downloads": {
    "count": 4832,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/usdm"
  },
  "_mentions": 85,
  "_devurl": "https://github.com/babaknaimi/usdm",
  "_searchresults": 828,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/usdm.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/babaknaimi/usdm",
  "_realowner": "babaknaimi",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.1-7",
      "date": "2012-11-15"
    },
    {
      "version": "1.1-8",
      "date": "2013-03-20"
    },
    {
      "version": "1.1-12",
      "date": "2013-07-23"
    },
    {
      "version": "1.1-15",
      "date": "2015-08-01"
    },
    {
      "version": "1.1-18",
      "date": "2017-06-25"
    },
    {
      "version": "2.1-6",
      "date": "2023-07-07"
    },
    {
      "version": "2.1-7",
      "date": "2023-09-29"
    }
  ],
  "_exports": [
    "exclude",
    "lisa",
    "speciesLisa",
    "Variogram",
    "vif",
    "vifcor",
    "vifstep"
  ],
  "_help": [
    {
      "page": "usdm-package",
      "title": "Uncertainty analysis for SDMs",
      "topics": [
        "usdm-package",
        "usdm"
      ]
    },
    {
      "page": "exclude",
      "title": "Excluding variables specified in a VIF object",
      "topics": [
        "exclude",
        "exclude,data.frame,missing-method",
        "exclude,data.frame,VIF-method",
        "exclude,matrix,missing-method",
        "exclude,matrix,VIF-method",
        "exclude,RasterBrick,missing-method",
        "exclude,RasterBrick,VIF-method",
        "exclude,RasterStack,missing-method",
        "exclude,RasterStack,VIF-method",
        "exclude,SpatRaster,missing-method",
        "exclude,SpatRaster,VIF-method"
      ]
    },
    {
      "page": "lisa",
      "title": "Local indicators of spatial association",
      "topics": [
        "lisa",
        "lisa,Raster,missing-method",
        "lisa,Raster,SpatialPoints-method",
        "lisa,Raster,SpatialPointsDataFrame-method",
        "lisa,SpatRaster,missing-method",
        "lisa,SpatRaster,SpatVector-method"
      ]
    },
    {
      "page": "plot.RasterVariogram",
      "title": "Plot variogram or variogram cloud or boxplot based on variogram cloud",
      "topics": [
        "plot,RasterVariogram-method",
        "plot.RasterVariogram"
      ]
    },
    {
      "page": "plot.speciesLisa",
      "title": "Plot positional uncertainty based on LISA",
      "topics": [
        "plot,speciesLISA,missing-method",
        "plot,speciesLISA,SpatialPolygons-method",
        "plot,speciesLISA,SpatialPolygonsDataFrame-method",
        "plot,speciesLISA,SpatVector-method",
        "plot.speciesLISA"
      ]
    },
    {
      "page": "RasterVariogram-class",
      "title": "RasterVariogram class",
      "topics": [
        "RasterVariogram-class",
        "show,RasterVariogram-method"
      ]
    },
    {
      "page": "speciesLisa",
      "title": "LISA in predictors at species occurrence locations",
      "topics": [
        "speciesLisa",
        "speciesLisa,Raster,SpatialPoints-method",
        "speciesLisa,Raster,SpatialPointsDataFrame-method",
        "speciesLisa,SpatRaster,SpatVector-method"
      ]
    },
    {
      "page": "speciesLISA-class",
      "title": "speciesLISA class",
      "topics": [
        "print,speciesLISA-method",
        "speciesLISA-class",
        "spoint-class"
      ]
    },
    {
      "page": "Variogram",
      "title": "Empirical variogram for raster data",
      "topics": [
        "Variogram",
        "Variogram,RasterLayer-method",
        "Variogram,SpatRaster-method"
      ]
    },
    {
      "page": "vif",
      "title": "Variance Inflation Factor and test for multicollinearity",
      "topics": [
        "vif",
        "vif,data.frame-method",
        "vif,matrix-method",
        "vif,RasterStackBrick-method",
        "vif,SpatRaster-method",
        "vifcor",
        "vifcor,data.frame-method",
        "vifcor,matrix-method",
        "vifcor,RasterStackBrick-method",
        "vifcor,SpatRaster-method",
        "vifstep",
        "vifstep,data.frame-method",
        "vifstep,matrix-method",
        "vifstep,RasterStackBrick-method",
        "vifstep,SpatRaster-method"
      ]
    },
    {
      "page": "VIF-class",
      "title": "VIF class",
      "topics": [
        "show,VIF-method",
        "VIF-class"
      ]
    }
  ],
  "_readme": "https://github.com/babaknaimi/usdm/raw/HEAD/README.md",
  "_rundeps": [
    "lattice",
    "raster",
    "Rcpp",
    "sp",
    "terra"
  ],
  "_score": 7.380308512781599,
  "_indexed": true,
  "_nocasepkg": "usdm",
  "_universes": [
    "babaknaimi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1-7",
      "date": "2026-07-04T09:45:27.000Z",
      "distro": "resolute",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/002c662a84185db2728c1b35b30b398ebac0e8b0decbcc6d77081a7c7d04d66a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.1-7",
      "date": "2026-07-04T09:45:21.000Z",
      "distro": "resolute",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/d4f60be4091cf05be52c116179f9d287563e7694ef68b0b9c25b57e7ebb546f4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1-7",
      "date": "2026-07-04T10:16:28.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/74e6bd4dd68a02c7c6ad11a329db4bd930922242e8ffa04ee1d4b265c6843b96",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.1-7",
      "date": "2026-07-04T10:15:53.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/13086cfbf932d1e9637b1701628b59e548575f161a0092cd7ca6cb9b456d771e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1-7",
      "date": "2026-07-04T09:45:55.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/04ca73dd28c8676fe6b5255c0ff05df39280cd376ae7092d41cbe10b9085c4dd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1-7",
      "date": "2026-07-04T09:44:29.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/d6849a12103be92566041b40ee5ae050b85f91e22ecd5c01ab8441332e72b963",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1-7",
      "date": "2026-07-04T09:44:24.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/c7502257f3301ecea946ee930ce8026648c1b7284f0975790322b1bfdff27ffb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.1-7",
      "date": "2026-07-04T09:44:38.000Z",
      "commit": "dcbdcedda87f2bf8f4c89c18e3cc8bd73f96014f",
      "fileid": "https://r2.ropensci.org/31a5f5cca252aca13be143b61bb7a48961a02ddbe63ed06c372c2bb6cb8ed373",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/babaknaimi/actions/runs/28702217193"
    }
  ]
}