Package: usdm 2.1-7
usdm: Uncertainty Analysis for Species Distribution Models
This is a framework that aims to provide methods and tools for assessing the impact of different sources of uncertainties (e.g.positional uncertainty) on performance of species distribution models (SDMs).)
Authors:
usdm_2.1-7.tar.gz
usdm_2.1-7.zip(r-4.5)usdm_2.1-7.zip(r-4.4)usdm_2.1-7.zip(r-4.3)
usdm_2.1-7.tgz(r-4.4-any)usdm_2.1-7.tgz(r-4.3-any)
usdm_2.1-7.tar.gz(r-4.5-noble)usdm_2.1-7.tar.gz(r-4.4-noble)
usdm_2.1-7.tgz(r-4.4-emscripten)usdm_2.1-7.tgz(r-4.3-emscripten)
usdm.pdf |usdm.html✨
usdm/json (API)
| # Install 'usdm' in R: |
| install.packages('usdm', repos = c('https://babaknaimi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/babaknaimi/usdm/issues
Last updated 1 years agofrom:dcbdcedda8. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 23 2024 |
| R-4.5-win | OK | Oct 23 2024 |
| R-4.5-linux | OK | Oct 23 2024 |
| R-4.4-win | OK | Oct 23 2024 |
| R-4.4-mac | OK | Oct 23 2024 |
| R-4.3-win | OK | Oct 23 2024 |
| R-4.3-mac | OK | Oct 23 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Uncertainty analysis for SDMs | usdm-package usdm |
| Excluding variables specified in a VIF object | exclude exclude,data.frame,missing-method exclude,data.frame,VIF-method exclude,matrix,missing-method exclude,matrix,VIF-method exclude,RasterBrick,missing-method exclude,RasterBrick,VIF-method exclude,RasterStack,missing-method exclude,RasterStack,VIF-method exclude,SpatRaster,missing-method exclude,SpatRaster,VIF-method |
| Local indicators of spatial association | lisa lisa,Raster,missing-method lisa,Raster,SpatialPoints-method lisa,Raster,SpatialPointsDataFrame-method lisa,SpatRaster,missing-method lisa,SpatRaster,SpatVector-method |
| Plot variogram or variogram cloud or boxplot based on variogram cloud | plot,RasterVariogram-method plot.RasterVariogram |
| Plot positional uncertainty based on LISA | plot,speciesLISA,missing-method plot,speciesLISA,SpatialPolygons-method plot,speciesLISA,SpatialPolygonsDataFrame-method plot,speciesLISA,SpatVector-method plot.speciesLISA |
| RasterVariogram class | RasterVariogram-class show,RasterVariogram-method |
| LISA in predictors at species occurrence locations | speciesLisa speciesLisa,Raster,SpatialPoints-method speciesLisa,Raster,SpatialPointsDataFrame-method speciesLisa,SpatRaster,SpatVector-method |
| speciesLISA class | print,speciesLISA-method speciesLISA-class spoint-class |
| Empirical variogram for raster data | Variogram Variogram,RasterLayer-method Variogram,SpatRaster-method |
| Variance Inflation Factor and test for multicollinearity | vif vif,data.frame-method vif,matrix-method vif,RasterStackBrick-method vif,SpatRaster-method vifcor vifcor,data.frame-method vifcor,matrix-method vifcor,RasterStackBrick-method vifcor,SpatRaster-method vifstep vifstep,data.frame-method vifstep,matrix-method vifstep,RasterStackBrick-method vifstep,SpatRaster-method |
| VIF class | show,VIF-method VIF-class |
